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論文リスト

doi title author source_title year
6630 10.1016/j.immuni.2019.08.012 Defining Hla-Ii Ligand Processing And Binding Rules With Mass Spectrometry Enhances Cancer Epitope Prediction Abelin, Jennifer G.; Harjanto, Dewi; Malloy, Matthew; Suri, Prerna; Colson, Tyler; Goulding, Scott P.; Creech, Amanda L.; Serrano, Lia R.; Nasir, Gibran; Nasrullah, Yusuf; Mcgann, Christopher D.; Velez, Diana; Ting, Ying S.; Poran, Asaf; Rothenberg, Daniel A.; Chhangawala, Sagar; Rubinsteyn, Alex; Hammerbacher, Jeff; Gaynor, Richard B.; Fritsch, Edward F.; Greshock, Joel; Oslund, Rob C.; Barthelme, Dominik; Addona, Terri A.; Arieta, Christina M.; Rooney, Michael S. Immunity 2019
11129 10.1021/acs.jproteome.9b00874 Improved Prediction Of Mhc Ii Antigen Presentation Through Integration And Motif Deconvolution Of Mass Spectrometry Mhc Eluted Ligand Data Reynisson, Birkir, 0000-0002-7016-4938; Barra, Carolina; Kaabinejadian, Saghar; Hildebrand, William H.; Peters, Bjoern; Nielsen, Morten, 0000-0001-7885-4311 Journal Of Proteome Research 2020
12594 10.1038/nbt.4313 Deep Learning Using Tumor Hla Peptide Mass Spectrometry Datasets Improves Neoantigen Identification Bulik-Sullivan, Brendan; Busby, Jennifer; Palmer, Christine D; Davis, Matthew J; Murphy, Tyler; Clark, Andrew; Busby, Michele; Duke, Fujiko; Yang, Aaron; Young, Lauren; Ojo, Noelle C; Caldwell, Kamilah; Abhyankar, Jesse; Boucher, Thomas; Hart, Meghan G; Makarov, Vladimir; De Montpreville, Vincent Thomas; Mercier, Olaf; Chan, Timothy A; Scagliotti, Giorgio; Bironzo, Paolo; Novello, Silvia; Karachaliou, Niki; Rosell, Rafael; Anderson, Ian; Gabrail, Nashat; Hrom, John; Limvarapuss, Chainarong; Choquette, Karin; Spira, Alexander; Rousseau, Raphael; Voong, Cynthia; Rizvi, Naiyer A; Fadel, Elie; Frattini, Mark; Jooss, Karin; Skoberne, Mojca; Francis, Joshua; Yelensky, Roman, 0000-0002-5356-0111 Nature Biotechnology 2018
13269 10.1038/s41467-020-14968-9 Integrated Proteogenomic Deep Sequencing And Analytics Accurately Identify Non-Canonical Peptides In Tumor Immunopeptidomes Chong, Chloe; Muller, Markus, 0000-0003-0907-3583; Pak, Huisong; Harnett, Dermot; Huber, Florian; Grun, Delphine; Leleu, Marion; Auger, Aymeric; Arnaud, Marion; Stevenson, Brian J.; Michaux, Justine; Bilic, Ilija, 0000-0002-2730-1634; Hirsekorn, Antje; Calviello, Lorenzo; Simo-Riudalbas, Laia; Planet, Evarist; Lubi<U+0144>ski, Jan; Bry<U+015B>kiewicz, Marta; Wiznerowicz, Maciej, 0000-0003-4960-6321; Xenarios, Ioannis; Zhang, Lin, 0000-0003-1998-0611; Trono, Didier; Harari, Alexandre, 0000-0002-1055-2090; Ohler, Uwe, 0000-0002-0881-3116; Coukos, George, 0000-0001-8813-7367; Bassani-Sternberg, Michal, 0000-0002-1934-954X Nature Communications 2020
14518 10.1038/s41587-019-0280-2 Predicting Hla Class Ii Antigen Presentation Through Integrated Deep Learning Chen, Binbin; Khodadoust, Michael S.; Olsson, Niclas, 0000-0002-9746-0542; Wagar, Lisa E.; Fast, Ethan; Liu, Chih Long; Muftuoglu, Yagmur; Sworder, Brian J.; Diehn, Maximilian, 0000-0003-2032-0581; Levy, Ronald; Davis, Mark M., 0000-0001-6868-657X; Elias, Joshua E., 0000-0002-8063-3259; Altman, Russ B.; Alizadeh, Ash A., 0000-0002-5153-5625 Nature Biotechnology 2019
14519 10.1038/s41587-019-0289-6 Robust Prediction Of Hla Class Ii Epitopes By Deep Motif Deconvolution Of Immunopeptidomes Racle, Julien, 0000-0002-0100-0323; Michaux, Justine; Rockinger, Georg Alexander; Arnaud, Marion; Bobisse, Sara; Chong, Chloe; Guillaume, Philippe; Coukos, George; Harari, Alexandre; Jandus, Camilla, 0000-0002-7405-5747; Bassani-Sternberg, Michal, 0000-0002-1934-954X; Gfeller, David, 0000-0002-3952-0930 Nature Biotechnology 2019
14522 10.1038/s41587-019-0322-9 A Large Peptidome Dataset Improves Hla Class I Epitope Prediction Across Most Of The Human Population Sarkizova, Siranush; Klaeger, Susan, 0000-0002-0074-5163; Le, Phuong M.; Li, Letitia W.; Oliveira, Giacomo; Keshishian, Hasmik; Hartigan, Christina R.; Zhang, Wandi; Braun, David A.; Ligon, Keith L.; Bachireddy, Pavan; Zervantonakis, Ioannis K., 0000-0003-2386-9553; Rosenbluth, Jennifer M., 0000-0003-1314-6976; Ouspenskaia, Tamara; Law, Travis, 0000-0002-7399-3299; Justesen, Sune; Stevens, Jonathan; Lane, William J., 0000-0002-1097-5229; Eisenhaure, Thomas; Lan Zhang, Guang; Clauser, Karl R.; Hacohen, Nir, 0000-0002-2349-2656; Carr, Steven A., 0000-0002-7203-4299; Wu, Catherine J., 0000-0002-3348-5054; Keskin, Derin B., 0000-0002-8496-6181 Nature Biotechnology 2019
17332 10.1093/nar/gkaa379 Netmhcpan-4.1 And Netmhciipan-4.0: Improved Predictions Of Mhc Antigen Presentation By Concurrent Motif Deconvolution And Integration Of Ms Mhc Eluted Ligand Data Reynisson, Birkir; Alvarez, Bruno, 0000-0001-8735-2719; Paul, Sinu; Peters, Bjoern; Nielsen, Morten, 0000-0001-7885-4311 Nucleic Acids Research 2020
19079 10.1126/scitranslmed.aau5516 Noncoding Regions Are The Main Source Of Targetable Tumor-Specific Antigens Laumont, Celine M., 0000-0002-9067-4054; Vincent, Krystel, 0000-0001-6180-5345; Hesnard, Leslie, 0000-0002-4623-7703; Audemard, Eric, 0000-0002-1661-896X; Bonneil, Eric, 0000-0002-4039-3131; Laverdure, Jean-Philippe, 0000-0002-9245-6413; Gendron, Patrick, 0000-0001-9829-2600; Courcelles, Mathieu, 0000-0001-5961-8858; Hardy, Marie-Pierre; Cote, Caroline, 0000-0002-2623-9808; Durette, Chantal; St-Pierre, Charles; Benhammadi, Mohamed, 0000-0002-1564-7734; Lanoix, Joel; Vobecky, Suzanne, 0000-0001-5592-6896; Haddad, Elie, 0000-0003-2446-6879; Lemieux, Sebastien, 0000-0001-5477-1386; Thibault, Pierre, 0000-0001-5993-0331; Perreault, Claude, 0000-0001-9453-7383 Science Translational Medicine 2018
20140 10.1186/s13073-019-0636-8 Multi-Omics Discovery Of Exome-Derived Neoantigens In Hepatocellular Carcinoma Loffler, Markus W., 0000-0003-2513-1317; Mohr, Christopher; Bichmann, Leon; Freudenmann, Lena Katharina; Walzer, Mathias; Schroeder, Christopher M.; Trautwein, Nico; Hilke, Franz J.; Zinser, Raphael S.; Muhlenbruch, Lena; Kowalewski, Daniel J.; Schuster, Heiko; Sturm, Marc; Matthes, Jakob; Riess, Olaf; Czemmel, Stefan; Nahnsen, Sven; Konigsrainer, Ingmar; Thiel, Karolin; Nadalin, Silvio; Beckert, Stefan; Bosmuller, Hans; Fend, Falko; Velic, Ana; Ma<U+010D>ek, Boris; Haen, Sebastian P.; Buonaguro, Luigi; Kohlbacher, Oliver; Stevanovi<U+0107>, Stefan; Konigsrainer, Alfred; Rammensee, Hans-Georg Genome Medicine 2019